I don't understand that point. From my understanding both devices, the DigiX and the Arduino DUE have both an 5-pin micro-AB socket with the UOTGID (pin4).
To flash the devices or to use the programmed device as a peripheral device (e.g. act as keyboard, mouse, CDC-COM-port, ...) you need to use a standard AB-cable with a micro-B plug pointing to the DUE/DigiX.
When using USB-OTG where the DigiX or the Arduino DUE acts as master, and the application wishes to use a connected keyboard, mouse, disk, ... you need to use an OTG-cable.
This cable has an special micro-A plug, pointing to the DUE/DigiX; on that plug the UOTGID-pin (4) is grounded, which is the trigger, that USB goes to host mode.
On the other end of that cable can be either an type B plug, which will connect direct to the peripheral or there can be an normal type A socket, where a normal A-B cable can be plugged in for connecting the peripheral device.
I have used both cable types with my DigiX, the adapter-cable and the straight OTG-cable.
However I may have missed some detail.
I have right now no access to an DUE, but I will check both ways there, as soon as I will get the next into my hands.